PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G25750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 436aa    MW: 45605.2 Da    PI: 8.335
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G25750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.68.9e-08217237526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   +C ++ar G+Ck G++C+F Hg
  OB03G25750.1 217 PCLYYAR-GFCKNGSSCRFVHG 237
                   8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.723212239IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028214238IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5215237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-5216237IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5217237IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MDAYEATKVV FSRIQALDPD HAAKIMGFLL IQDHGDKEMI RLAFGPEALL QSVIAQARKD  60
LALLPASSPT VSAAGHAPFL LSRQSSGRGA APALPATSPS SWAQAQPFSR SNSMSNGAAD  120
ELLCAGEELS PVNSAGVAAA APPFFPRGGD SLLDDFQLQE QLAFLHEGAG GVNPGHALPV  180
FDGAECWPSG GPGHRRSASV NELFLGGGGG DAFGWKPCLY YARGFCKNGS SCRFVHGGLS  240
DDFAVAGMDA AAAEQQQCQD FLPRSKSQHL GPAAFPFSPT GPLPGSPSAT SKCLSLLLQQ  300
QHNDNQRAAA AAMMLGGGGG GHGGAQVHGS AASGPRRLRQ HDEPRIAPDL PHLPGRQHVP  360
RGGRLQLLQH LRAGARRAHS VPAEAHVRVR HLRVPRDGEA DLGQGQPAFH LRRPRARQAL  420
QGEGQGPGQV QEAAAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029180.0AK102918.1 Oryza sativa Japonica Group cDNA clone:J033114B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650026.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 23-like
SwissprotQ10LZ91e-154C3H23_ORYSJ; Zinc finger CCCH domain-containing protein 23
TrEMBLJ3LNE90.0J3LNE9_ORYBR; Uncharacterized protein
STRINGOB03G25750.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14331115